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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Russian Journal of Genetics</journal-id><journal-title-group><journal-title xml:lang="en">Russian Journal of Genetics</journal-title><trans-title-group xml:lang="ru"><trans-title>Генетика</trans-title></trans-title-group></journal-title-group><issn publication-format="print">0016-6758</issn><issn publication-format="electronic">3034-5103</issn><publisher><publisher-name xml:lang="en">The Russian Academy of Sciences</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">700414</article-id><article-id pub-id-type="doi">10.7868/S3034510325120068</article-id><article-categories><subj-group subj-group-type="toc-heading"><subject>ГЕНЕТИКА ЖИВОТНЫХ</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Analysis of mtDNA Haplogroup Variability in Horses of Native Breeds of Russia</article-title><trans-title-group xml:lang="ru"><trans-title>АНАЛИЗ ВАРИАБЕЛЬНОСТИ ГАПЛОГРУПП мтДНК У ЛОШАДЕЙ АБОРИГЕННЫХ ПОРОД РОССИИ</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Blohina</surname><given-names>N. V</given-names></name><name xml:lang="ru"><surname>Блохина</surname><given-names>Н. В</given-names></name></name-alternatives><email>nbloh16@yandex.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Khrabrova</surname><given-names>L. A</given-names></name><name xml:lang="ru"><surname>Храброва</surname><given-names>Л. А</given-names></name></name-alternatives><email>-</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Sorokin</surname><given-names>S. I</given-names></name><name xml:lang="ru"><surname>Сорокин</surname><given-names>С. И</given-names></name></name-alternatives><email>-</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">All Russian Research Institute for Horse Breeding</institution></aff><aff><institution xml:lang="ru">Всероссийский научно-исследовательский институт коневодства</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2025-12-15" publication-format="electronic"><day>15</day><month>12</month><year>2025</year></pub-date><volume>61</volume><issue>12</issue><issue-title xml:lang="en">VOL 61, NO12 (2025)</issue-title><issue-title xml:lang="ru">ТОМ 61, №12 (2025)</issue-title><fpage>63</fpage><lpage>71</lpage><history><date date-type="received" iso-8601-date="2026-01-08"><day>08</day><month>01</month><year>2026</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2025, Russian Academy of Sciences</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2025, Российская академия наук</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="en">Russian Academy of Sciences</copyright-holder><copyright-holder xml:lang="ru">Российская академия наук</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/" start_date="2026-12-15"/></permissions><self-uri xlink:href="https://rjraap.com/0016-6758/article/view/700414">https://rjraap.com/0016-6758/article/view/700414</self-uri><abstract xml:lang="en"><p>The article presents the results of studying the hypervariable sequence of the mtDNA D-loop of 205 horses from ten indigenous breeds, including the Buryatskaya, Vyatskaya, Zabaykalskaya, Mezenskaya, Pechorskaya, Priobskaya, Tavdinskaya, Tuvinskaya, Khakasskaya and Yakutskaya populations. A wide range of mtDNA haplotypes and haplogroups (<italic>Hd</italic> = 95.61) were identified in horses of the studied populations, including original mitotypes and new mitogroups not previously described in other horse breeds. In addition to 17 standard mtDNA groups (A–R), additional phylogenetic clusters were identified in horses of Buryatskaya (T, Y, Z), Vyatskaya (U and Y), Mezenskaya (U), Priobskaya (U, W) and Khakasskaya (Y) breeds. The results obtained demonstrate a certain commonality and originality of the matrilineal structure of the indigenous horse breeds of North-Eastern Eurasia.</p></abstract><trans-abstract xml:lang="ru"><p>В статье представлены результаты изучения гипервариабельной последовательности D-петли мтДНК 205 лошадей десяти аборигенных пород, включая бурятскую, вятскую, забайкальскую, мезенскую, печорскую, приобскую, тавдинскую, тувинскую, хакасскую и якутскую. У лошадей изученных популяций был выявлен широкий спектр гаплотипов и гаплогрупп мтДНК (<italic>Hd</italic> = 95.61), включая оригинальные митотипы и новые митогруппы, не описанные ранее у других пород лошадей. Помимо 17-ти стандартных групп мтДНК (A–R), были выявлены дополнительные филогенетические кластеры, у лошадей бурятской (T, Y, Z), вятской (U и Y), мезенской (U), приобской (U, W) и хакасской (Y) пород. Полученные результаты демонстрируют определенную общность и оригинальность матрилинейной структуры аборигенных пород лошадей Северо-Восточной Евразии.</p></trans-abstract><kwd-group xml:lang="en"><kwd>genetic diversity</kwd><kwd>haplogroups mtDNA</kwd><kwd>abortigenic breeds</kwd><kwd>horse</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>генетическое разнообразие</kwd><kwd>гаплогруппы</kwd><kwd>митохондриальная ДНК</kwd><kwd>аборигенные породы</kwd><kwd>лошадь</kwd></kwd-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Bowling A.T., Ruvinski A. The genetics of the horse. CABI Publishing, Wallingford, 2000. 528 p. https://doi.org/10.1053/tvjl.2000.0534</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Agbani A., Aminou O., Machmoum M. et al. A systematic literature review of mitochondrial DNA analysis for horse genetic diversity // Animals 2025. 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